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 Hisham Mohamed, Mohamed Abouelhoda. Selected Parallel Algorithms for Bioinformatics applications: Parallel Computing for Bioinformatics Applications. Lambert Publishing 2011.

·         Mohamed I. Abouelhoda, Moustafa Ghanem. String Mining in Bioinformatics. Data Mining, edited by Mohamed M. Gaber, Springer.  2010.

·         Mohamed I. Abouelhoda, Algorithmen und Ein Software System für Genomvergleich (Algorithms and a Software System for Comparative Genome Analysis), In Ausgezeichnete Informatikdissertationen, LNI, 2006.

·         Mohamed I. Abouelhoda. Algorithms and a Software System for Comparative Genome Analysis. PhD Thesis, University of Ulm, Germany, July 2005.

·         Mohamed I. Abouelhoda, Stefan Kurtz, Enno Ohlebusch. Enhanced Suffix Arrays and Applications. Handbook of Computational Molecular Biology (Chapter 8), edited by Srinivas Aluru, Chapman & Hall/CRC Computer and Information Science Series, 2005.

·         Enno Ohlebusch, Mohamed I. Abouelhoda. Chaining Algorithms and Applications in Comparative Genomics. Handbook of Computational Molecular Biology (Chapter 20), edited by Srinivas Aluru, Chapman & Hall/CRC Computer and Information Science Series, 2005

Mohamed I. Abouelhoda. Solving the Steiner Tree problem for the Design of Medical Gas Networks, Master Thesis, Faculty of Engineering, Cairo University, 2001.